Friday, December 22, 2017

NEWS POSTS: How Drug Development Is Speeding Up In The Cloud; Open Source Drug Discovery: ‘We Should Own Our Own Livelihood And Our Own Dream’

Developing new drugs to fight major diseases can take years and cost billions of dollars Image copyright: THINKSTOCK
Developing a drug from a promising molecule to a potential life-saver can take more than a decade and cost billions of dollars. Speeding this process up - without compromising on safety or efficacy - would seem to be in everyone's interests. And cloud computing is helping to do just that.

"Cloud platforms are globally accessible and easily available," says Kevin Julian, managing director at Accenture Life Sciences, Accelerated R&D Services division. "This allows for real-time collection of data from around the world, providing better access to data from inside life sciences companies, as well as from the many partners they work with in the drug development process."

Clinical trials - testing how a new drug works on people once you've tested it on animals - are a crucial part of this process. But they can be very complex to organize and run. There are three main phases, starting with a small group of healthy volunteers, then widening out to larger groups who would benefit from the drug. "A big phase three trial will cost anything from US$30m-US$60m (£24m-£48m) for a pharma company," says Steve Rosenberg, general manager of Oracle Health Sciences Global Business Unit. These trials may be conducted over 30 to 50 countries and involve hundreds or even thousands of patients - this takes a lot of time and money.

"Patient recruitment has always been the number one problem," says Mr Rosenberg.

And as drug development targets more specific groups of people, largely thanks to the insights coming from genomics, finding the right patients for such clinical studies is becoming even harder. This is where the cloud can help.

"With cloud and related technologies, we are now able to mine real-world data to find patient populations better, and utilise globally available technology to conduct trials in an even more distributed and inclusive manner," says Mr Julian.

Saving time
Cloud and increasing digitalization is also helping to improve the efficiency of data collection and analysis.

"Data collection used to be very inefficient, with data being written on paper forms, faxed and then entered into computers manually," explains Tarek Sherif, co-founder and chief executive of Medidata, a company that has developed a cloud platform for clinical trials.
"Then it had to be double-checked for errors. It could take up to a year before you could draw any conclusions from the patient data."

Digitizing the process and automating the checking process in the cloud has reduced this time to "one to two weeks," says Mr Sherif.

And cloud offers many additional advantages to pharma companies, says Mr Rosenberg. "These days health data is coming from a wide variety of sources, like labs, wearable devices, electronic diaries, health records. Pharma companies can't necessarily handle all the data that's coming in to them. So cloud computing helps them do that and gives them a whole bunch of other advantages - the technology is kept up to date, you get the latest security, the latest features and so on."

A spokesman for pharmaceutical giant GlaxoSmithKline (GSK) told the BBC: "Advances in computing and data analytics are providing new opportunities to improve the efficiency of our research and increase our understanding of a disease or a patient's response to medication."

Speeding up the clinical trial process also cuts costs. "We were able to save one of our clients about 30% on the cost of running a trial," says Mr Sherif, whose firm facilitates nearly half of all clinical trials in the world and counts 17 of the top 25 pharma companies as clients. And Accenture's Mr Julian says: "We've seen overall savings of 50% - in some cases up to 75% - on the historically labour-intensive parts of the drug development process."

Of course, not all prospective drugs work, or they're shown to work but not any better than existing drugs on the market.

"So the Holy Grail is to fail faster so you're not failing in the very final phases of drug development when you've already spent most of your money," says Mr Sherif.

Wearables
Winning regulatory approval for a drug is only half the battle. Pharma companies also have to convince health services and insurance companies that's it's worth paying for. This means collecting reliable patient data.

In the past, patients were often asked to keep written diaries of their experiences with a drug being tested, but these were "horribly inefficient", says Mr Sherif. So the rise of electronic diaries and wearable devices is helping to improve the evidence a pharma company can present in defence of their latest drug.

With this is mind, Oracle is helping add "mHealth" capability to Accenture Life Sciences' cloud platform.

And GSK says: "We've been conducting clinical studies with biosensors and mobile devices for some time. Today's digital technology is enabling us to collect and analyse data in new ways - monitoring activity and vital signs in patients, and collecting patient feedback in real time, improving the quality of data we use in the development of new medicines."

Collaboration
The cloud is also encouraging more pharma companies to co-operate on molecule development [the building blocks of a potential drug], says Mr Rosenberg, as well as on data analysis.

And all this anonymized patient data - historical and recent - can potentially be shared in the battle to combat disease. "We are seeing clients increasingly use 'virtual studies' - using external and historical data to perform advanced statistical analysis and reduce the need for complicated, costly site-based study activity," says Accenture's Mr Julian, citing a collaborative Alzheimer's project between some of its clients and the Coalition Against Major Disease.

But while efficiencies in the drug development process are undoubtedly being found, discovering the initial molecule is still very difficult, experts warn. Cloud computing is having a big practical impact, but won't necessarily result in a flurry of "miracle" cures.

Tanusree Chaudhuri (centre) with two of her remote-working research colleagues Image copyright: TANUSREE CHAUDHURI
NEWS POST: IndiaOpen Source Drug Discovery:‘We Should Own Our Own Livelihood And Our Own Dream’
Tanusree Chaudhuri, 38, was pregnant with her first child when her supervisor told her she would have to give up her dreams. She was doing a doctorate in computational biology and aspired to improve people's health. "He told me 'you are married now, why do you need a PhD? You should go take care of your family'," she says.

She'd hoped to work in drug discovery creating new medicines, after studying at the prestigious Bose Institute in Kolkata, India. But when she married and moved to Hyderabad for her husband's job, she encountered cultural resistance. "Married women are expected to take care of family because without family we are nothing," she says. "We're not expected to want the privilege of thinking and doing research."

So when she came across an online "virtual laboratory" enabling researchers to carry out important work from home, she jumped at the chance to get involved. 

The Open Source Drug Discovery (OSDD) platform was run by the Indian government and enabled scientists to collaborate remotely, searching for molecules that could be turned into useful medicines. Dr Chaudhuri found she could work from home at times that suited her and her baby. "I met many different people [virtually]. I remember one girl was from somewhere very remote. But it was possible to work with her because I spoke to her through Skype. We never met or visited face-to-face," recalls Dr Chaudhuri.

There are many other open source platforms in the scientific community, each with their own specialism, from genomic analysis to cancer research, and many women across India and other emerging economies are finding them very liberating.

After the government-run platform closed in 2016, Dr Chaudhuri and her colleagues began working for another organisation, the Open Source Pharma Foundation (OSPF), a joint venture between pharmaceutical industry professionals and academics. It is dedicated to discovering affordable medicines by enabling remote collaboration around the world.

Ayisha Safeeda, from Kuttichira in the southern state of Kerala, is from a very traditional Muslim family and lives in a remote area. But she has been able to pursue her Masters degree through the open source platform. "Even if I feed my baby I can read research papers or I can do work on my laptop," she says. "So women who have high potential but are buried inside the family should come forward."

The work these women do in the virtual lab involves whittling down the choice of potential molecules that could eventually be turned into drugs to fight diseases, such as tuberculosis. Dr Chaudhuri develops software for OSPF to help scientists from different disciplines, such as biology or physics, collaborate on the platform. Rakhila Pradeep, another virtual researcher from Tamil Nadu, says she has always loved research but has found it impossible to get to research centres.

"The daily commute to far-flung universities from our rural village is a cumbersome journey and not practical for us," she says. "We were unable to get away from our children and aged family members for days on end."

Dr UC Jaleel, an expert in cheminformatics and computational biology, has supervised many of the projects carried out by these skilled home workers. He believes they are a massive untapped source of expertise. Recalling his college days, women students usually outnumbered - and outclassed - their male contemporaries, he says. But then they would disappear. He analysed the statistics in a district of Kerala where he is based and the results were "astonishing", he says. "These women were all highly educated, but the majority of them ended up as housewives after marrying."

Dr Jaleel is a firm believer in OSPF's crowd sourcing model, particularly if it leads to cheaper medicines for the world's poorer families. "The common goal is to reduce the time and cost of drug discovery, connect the disconnected and mobilize neglected human potential for humanitarian purposes," he says.

Dr Chaudhuri agrees, saying: "Things will progress further. Rather than make everyone gather at one place like an office, let's give others opportunities. "You might think at night or you might think in the morning. You might think whenever you want. We can get the answer and we will go forward."

Els Torreele, executive director of charity Medecins Sans Frontieres' access campaign, believes crowd sourcing could have an important role to play in affordable drug discovery.
"Open source research collaborations are an important and timely strategy to advance and possibly accelerate medical innovation," she says, "including in the area of neglected diseases where knowledge sharing is even more critical than in other fields."

OSPF is still in its early stages, however, and it's not without its challenges - poor internet connectivity in many rural areas being one of them.

Funding is another concern, although it has received seed funding from Indian foundation Tata Trusts. Much of the work is now being done via several university servers and social media. But Dr Chaudhuri, who not only has a PhD but is now an assistant professor, says she and her students plan to work on OSPF to help it expand. "Dreaming for us Indian girls is prohibited unless we have this kind of opportunity," she says. "We should own our own livelihood and our own dream."

Discovering new molecules that could be developed in to drugs is still very difficult. Image copyright: THINKSTOCK
Originally published (STORY 1) and (STORY 2) on BBC

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